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Cow Bay Flux Data Release 2025_v1 

Ver: 2025_v1
Status of Data: completed
Update Frequency: biannually
Security Classification: unclassified
Record Last Modified: 2025-03-24
Viewed 10 times
Accessed 10 times
Dataset Created: 2025-03-13
Dataset Published: 2025-03-24
Data can be accessed from the following links:
HTTPPoint-of-truth metadata URLOPeNDAPNetCDF files (2025_v1)HTTPro-crate-metadata.json
How to cite this collection:
Liddell, M. & Weigand, N. (2025). Cow Bay Flux Data Release 2025_v1. Version 2025_v1. Terrestrial Ecosystem Research Network. Dataset. https://dx.doi.org/10.25901/x56y-fq54 
This release consists of flux tower measurements of the exchange of energy and mass between the surface and the atmospheric boundary-layer using eddy covariance techniques. Data were processed using PyFluxPro (v3.4.18) as described by Isaac et al. (2017). PyFluxPro produces a final, gap-filled product with Net Ecosystem Exchange (NEE) partitioned into Gross Primary Productivity (GPP) and Ecosystem Respiration (ER).

The Cow Bay flux station was established in December 2008 and managed by James Cook University. The forest is classified as complex mesophyll vine forest, there are 94 species in the core 1 Ha, and average tree height is 22 m. Elevation of the site is 90 m and mean annual precipitation is 3935 mm. The Daintree Rainforest is one of the most biodiverse forests in Australia. The instruments are mounted on a walk-up tourist tower at 35 m. Fluxes of heat, water vapour and carbon dioxide are measured using the open-path eddy flux technique. Supplementary measurements above the canopy include temperature, humidity, windspeed, wind direction, rainfall, incoming and reflected shortwave radiation and net radiation.The early years 2009 - 12 had several data gaps. Shadowing of the radiometric equipment continues to cause artifacts on the radiometers - these can be seen as reduction in downwelling radiation with solar inclination. The site is part of the FNQ Rainforest SuperSite - associated with the Daintree node, which is part of the TERN, Australia. 
Credit
We at TERN acknowledge the Traditional Owners and Custodians throughout Australia, New Zealand and all nations. We honour their profound connections to land, water, biodiversity and culture and pay our respects to their Elders past, present and emerging.
The Cow Bay flux station is managed by James Cook University in a collaboration with the Daintree Discovery Centre. The site was co-funded by the Daintree Discovery Centre and the Terrestrial Ecosystem Research Network (TERN).
Past support was from the Department of Environment and Heritage - Marine and Tropical Sciences Research Facility Project 5ii.2. Climate Change: Scaling from trees to ecosystems. 
Purpose
The purpose of the Cow Bay flux station is to:
  • measure exchanges of carbon dioxide, water vapour and energy between the tropical lowland rainforest in Far North Queensland and the atmosphere using micrometeorological techniques
  • quantify the changes in carbon and water balances of an Australian tropical rainforest on a long term basis in the face of climate change
  • present the results from the study in real time to the public and inform the public on what these results mean.
 
Lineage
All flux raw data is subject to the quality control process OzFlux QA/QC to generate data from L1 to L6. Levels 3 to 6 are available for re-use. Datasets contain Quality Controls flags which will indicate when data quality is poor and has been filled from alternative sources. For more details, refer to Isaac et al. (2017). 
Method DocumentationIsaac P., Cleverly J., McHugh I., van Gorsel E., Ewenz C. and Beringer, J. (2017). OzFlux data: network integration from collection to curation, Biogeosciences, 14: 2903-2928
Procedure StepsData not provided.
The flux station is mounted at the 23 m level viewing platform on the visitor tower at the Daintree Discovery Centre at Cow Bay, 100 km from Cairns in Far North Queensland.
Temporal Coverage
From 2009-01-01 to 2025-02-02 
Spatial Resolution

Data not provided.

Vertical Extent

Data not provided.

Data Quality Assessment Scope
Processing levels

Under each of the data release directories, the netcdf files are organised by processing levels (L3, L4, L5 and L6):
  • L3 (Level 3) processing applies a range of quality assurance/quality control measures (QA/QC) to the L1 data. The variable names are mapped to the standard variable names (CF 1.8) as part of this step. The L3 netCDF file is then the starting point for all further processing stages.
  • L4 (Level 4) processing fills gaps in the radiation, meteorological and soil quantities utilising AWS (automated weather station), ACCESS-G (Australian Community Climate and Earth-System Simulator) and ERA5 (the fifth generation ECMWF atmospheric reanalysis of the global climate).
  • L5 (Level 5) processing fills gaps in the flux data employing the artificial neural network SOLO (self-organising linear output map).
  • L6 (Level 6) processing partitions the gap-filled NEE into GPP and ER.
Each processing level has two sub-folders ‘default’ and ‘site_pi’:
  • default: contains files processed using PyFluxPro
  • site_pi: contains files processed by the principal investigators of the site.
If the data quality is poor, the data is filled from alternative sources. Filled data can be identified by the Quality Controls flags in the dataset. Quality control checks include:
  • range checks for plausible limits
  • spike detection
  • dependency on other variables
  • manual rejection of date ranges
Specific checks applied to the sonic and IRGA data include rejection of points based on the sonic and IRGA diagnostic values and on either automatic gain control (AGC) or CO2 and H2O signal strength, depending upon the configuration of the IRGA.

Cow Bay Flux Tower was established in 2008, and is currently active. The processed data release is currently ongoing, biannually. 
Isaac P., Cleverly J., McHugh I., van Gorsel E., Ewenz C. and Beringer, J. (2017). OzFlux data: network integration from collection to curation, Biogeosciences, 14: 2903-2928
Data Quality Assessment Outcome
Data not provided. 
ANZSRC - FOR
Atmospheric sciences
Climate change impacts and adaptation
Ecosystem function
Environmental management
Soil sciences
GCMD Sciences
LAND SURFACE - SOIL TEMPERATURE
ATMOSPHERE - TURBULENCE
ATMOSPHERE - EVAPOTRANSPIRATION
LAND SURFACE - LAND PRODUCTIVITY
ATMOSPHERE - HUMIDITY
ATMOSPHERE - HEAT FLUX
ATMOSPHERE - TRACE GASES/TRACE SPECIES
ATMOSPHERE - LONGWAVE RADIATION
ATMOSPHERE - INCOMING SOLAR RADIATION
BIOSPHERE - TERRESTRIAL ECOSYSTEMS
ATMOSPHERE - ATMOSPHERIC PRESSURE MEASUREMENTS
ATMOSPHERE - SHORTWAVE RADIATION
ATMOSPHERE - WIND SPEED
SOLID EARTH - BIOGEOCHEMICAL PROCESSES
LAND SURFACE - SOIL MOISTURE/WATER CONTENT
ATMOSPHERE - ATMOSPHERIC CARBON DIOXIDE
ATMOSPHERE - PRECIPITATION AMOUNT
BIOSPHERE - PHOTOSYNTHETICALLY ACTIVE RADIATION
ATMOSPHERE - WIND DIRECTION
ATMOSPHERE - AIR TEMPERATURE
Horizontal Resolution
Point Resolution
Instruments
Hukseflux NR01
Environdata WeatherMaster 2000
Campbell Scientific CSAT3
Observator RIM-8000 series rain gauge
Vaisala WXT520
Vaisala HMP45C
Hukseflux HFP01
LI-COR LI-7500
Rotronic HC2(A)-S, HC2(A)-S3(H), HC2(A)-S-HH, HC2-S3CO3(-PT15), HC2(A)-SM and HC2-S and HC2A-S series
Campbell Scientific TCAV Averaging Soil Thermocouple Probe
Campbell Scientific CS616
LI-COR LI-190 (SA, SZ, and SL versions)
Parameters
wind speed
vertical wind
magnitude of surface downward stress
Monin-Obukhov length
net ecosystem productivity
gross primary productivity
surface friction velocity
ecosystem respiration
lateral component of wind speed
net ecosystem exchange
specific humidity saturation deficit in air
longitudinal component of wind speed
surface upward flux of available energy
enhanced vegetation index
downward heat flux at ground level in soil
volume fraction of condensed water in soil
surface upwelling longwave flux in air
thickness of rainfall amount
mole fraction of water vapor in air
water vapor partial pressure in air
wind from direction
surface upward mole flux of carbon dioxide
specific humidity
air temperature
surface net downward radiative flux
surface upward sensible heat flux
surface upward latent heat flux
mass concentration of water vapor in air
water evapotranspiration flux
surface downwelling photosynthetic photon flux in air
water vapor saturation deficit in air
surface air pressure
surface upwelling shortwave flux in air
surface downwelling longwave flux in air
soil temperature
mole fraction of carbon dioxide in air
surface downwelling shortwave flux in air
relative humidity
Platforms
Cow Bay Flux Station
Temporal Resolution
1 minute - < 1 hour
Topic
climatologyMeteorologyAtmosphere
User Defined
Au-Cow
mesophyll vine forest
Author
Liddell, Michael
Co-Author
Weigand, Nico
Contact Point
Liddell, Michael
Publisher
Terrestrial Ecosystem Research Network
Beringer J., Hutley L. B., McHugh I., Arndt S. K., Campbell D., Cleugh H. A., Cleverly J., Resco de Dios V., Eamus D., Evans B., Ewenz C., Grace P., Griebel A., Haverd V., Hinko-Najera N., Huete A., Isaac P., Kanniah K., Leuning R., Liddell M. J., Macfarlane C., Meyer W., Moore C., Pendall E., Phillips A., Phillips R. L., Prober S. M., Restrepo-Coupe N., Rutledge S., Schroder I., Silberstein R., Southall P., Yee M. S., Tapper N. J., van Gorsel E., Vote C., Walker J. and Wardlaw T. (2016). An introduction to the Australian and New Zealand flux tower network - OzFlux, Biogeosciences, 13: 5895-5916
Supplemental Information
Data not provided. 
Resource Specific Usage
Data not provided. 
Environment Description
File naming convention

The NetCDF files follow the naming convention below:

SiteName_ProcessingLevel_FromDate_ToDate_Type.nc
  • SiteName: short name of the site
  • ProcessingLevel: file processing level (L3, L4, L5, L6)
  • FromDate: temporal interval (start), YYYYMMDD
  • ToDate: temporal interval (end), YYYYMMDD
  • Type (Level 6 only): Summary, Monthly, Daily, Cumulative, Annual
For the NetCDF files at Level 6 (L6), there are several additional 'aggregated' files. For example:
  • Summary: This file is a summary of the L6 data for daily, monthly, annual and cumulative data. The files Monthly to Annual below are combined together in one file.
  • Monthly: This file shows L6 monthly averages of the respective variables, e.g. AH, Fc, NEE, etc.
  • Daily: same as Monthly but with daily averages.
  • Cumulative: File showing cumulative values for ecosystem respiration, evapo-transpiration, gross primary productivity, net ecosystem exchange and production as well as precipitation.
  • Annual: same as Monthly but with annual averages.
 
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Terrestrial Ecosystem Research Network
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Creative Commons Attribution 4.0 International Licence
https://creativecommons.org/licenses/by/4.0/
Please cite this dataset as {Author} ({PublicationYear}). {Title}. {Version, as appropriate}. Terrestrial Ecosystem Research Network. Dataset. {Identifier}. 
TERN services are provided on an “as-is” and “as available” basis. Users use any TERN services at their discretion and risk. They will be solely responsible for any damage or loss whatsoever that results from such use including use of any data obtained through TERN and any analysis performed using the TERN infrastructure.

Web links to and from external, third party websites should not be construed as implying any relationships with and/or endorsement of the external site or its content by TERN.

Please advise any work or publications that use this data via the online form at https://www.tern.org.au/research-publications/#reporting 

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Version:6.2.11