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Samford Ecological Research Facility Flux Data Release 2024_v1 

Ver: 2024_v1
Status of Data: completed
Update Frequency: biannually
Security Classification: unclassified
Record Last Modified: 2025-12-02
Viewed 40 times
Accessed 8 times
Dataset Created: 2024-03-13
Dataset Published: 2024-04-18
Data can be accessed from the following links:
HTTPPoint-of-truth metadata URLOPeNDAPNetCDF files (2024_v1)HTTPro-crate-metadata.json
How to cite this collection:
Grace, P., Rowlings, D., Grace, L. & Tucker, D. (2024). Samford Ecological Research Facility Flux Data Release 2024_v1. Version 2024_v1. Terrestrial Ecosystem Research Network. Dataset. https://dx.doi.org/10.25901/4e83-0n44 
This release consists of flux tower measurements of the exchange of energy and mass between the surface and the atmospheric boundary-layer using eddy covariance techniques. Data were processed using PyFluxPro (v3.4.17) as described by Isaac et al. (2017). PyFluxPro produces a final, gap-filled product with Net Ecosystem Exchange (NEE) partitioned into Gross Primary Productivity (GPP) and Ecosystem Respiration (ER).

Samford flux station is situated on an improved (Paspalum dilatum) pasture in the humid subtropical climatic region of coastal south-east Queensland. Located only 20 km from the centre of Brisbane city, Samford Valley provides an ideal case study to examine the impact of urbanisation and land use change on ecosystem processes. The valley covers an area of some 82 km2 and is drained in the southern regions by the Samford creek, which extends some 13 km to Samford Village and into the South Pine River. The Samford Valley is historically a rural area experiencing intense urbanisation, with the population increasing almost 50% in the 10 years to 2006 (Morton Bay Regional Council, 2011). Within the Samford valley study region, the Samford Ecological Research Facility (SERF) not only represents a microcosm of current and historical land uses in the valley, but provides a unique opportunity to intensively study various aspects of ecosystem health in a secure, integrated and long term research capacity. Mean annual minimum and maximum temperatures at a nearby Bureau of Meteorology site are 13.1 °C and 25.6 °C respectively while average rainfall is 1102 mm. 
Credit
We at TERN acknowledge the Traditional Owners and Custodians throughout Australia, New Zealand and all nations. We honour their profound connections to land, water, biodiversity and culture and pay our respects to their Elders past, present and emerging.
The site was established around the Samford Ecological Research Facility and managed by the Queensland University of Technology (QUT).

This work was jointly funded by the Terrestrial Ecosystem Research Network (TERN), an Australian Government National Collaborative Research Infrastructure Strategy (NCRIS) project, and the Queensland Government Research Infrastructure Co-investment Fund (RICF). 
Purpose
The purpose of the Samford site is to:
  • examine the influence of land-use change and intensification associated with peri-urban environments on soil, plant, animal and atmosphere interactions
  • measure the exchange of carbon dioxide, water vapour and energy between the soil/pasture and the atmosphere of an improved pasture in response to increasing harvest intervals
  • use micrometeorological techniques in conjunction with automatic GHG static closed chambers (CO2, N2O, CH4), soil moisture probe transects, stream water quality and terrestrial biomass measurements to close the carbon, water and nitrogen budgets of the improved pasture
  • develop a full global warming potential analysis from this data for this land use
  • examine the suitability of micrometeorological techniques in complex terrain in a sub-tropical environment.
 
Lineage
All flux raw data is subject to the quality control process OzFlux QA/QC to generate data from L1 to L6. Levels 3 to 6 are available for re-use. Datasets contain Quality Controls flags which will indicate when data quality is poor and has been filled from alternative sources. For more details, refer to Isaac et al. (2017). 
Method DocumentationIsaac P., Cleverly J., McHugh I., van Gorsel E., Ewenz C. and Beringer, J. (2017). OzFlux data: network integration from collection to curation, Biogeosciences, 14: 2903-2928PyFluxPro
Procedure StepsData not provided.
20km from the centre of Brisbane, Queensland
Temporal Coverage
From 2010-06-02 to 2017-12-31 
Spatial Resolution

Data not provided.

Vertical Extent

Data not provided.

Data Quality Assessment Scope
Processing levels

Under each of the data release directories, the netcdf files are organised by processing levels (L3, L4, L5 and L6):
  • L3 (Level 3) processing applies a range of quality assurance/quality control measures (QA/QC) to the L1 data. The variable names are mapped to the standard variable names (CF 1.8) as part of this step. The L3 netCDF file is then the starting point for all further processing stages.
  • L4 (Level 4) processing fills gaps in the radiation, meteorological and soil quantities utilising AWS (automated weather station), ACCESS-G (Australian Community Climate and Earth-System Simulator) and ERA5 (the fifth generation ECMWF atmospheric reanalysis of the global climate).
  • L5 (Level 5) processing fills gaps in the flux data employing the artificial neural network SOLO (self-organising linear output map).
  • L6 (Level 6) processing partitions the gap-filled NEE into GPP and ER.
Each processing level has two sub-folders ‘default’ and ‘site_pi’:
  • default: contains files processed using PyFluxPro
  • site_pi: contains files processed by the principal investigators of the site.
If the data quality is poor, the data is filled from alternative sources. Filled data can be identified by the Quality Controls flags in the dataset. Quality control checks include:
  • range checks for plausible limits
  • spike detection
  • dependency on other variables
  • manual rejection of date ranges
Specific checks applied to the sonic and IRGA data include rejection of points based on the sonic and IRGA diagnostic values and on either automatic gain control (AGC) or CO2 and H2O signal strength, depending upon the configuration of the IRGA.

Samford Ecological Research Facility Flux Tower was established in 2010, and is currently active. The processed data release is currently ongoing, biannually. 
Isaac P., Cleverly J., McHugh I., van Gorsel E., Ewenz C. and Beringer, J. (2017). OzFlux data: network integration from collection to curation, Biogeosciences, 14: 2903-2928
Data Quality Assessment Outcome
Data not provided. 
ANZSRC - FOR
Atmospheric sciences
Climate change impacts and adaptation
Ecosystem function
Environmental management
Soil sciences
GCMD Sciences
ATMOSPHERE - AIR TEMPERATURE
ATMOSPHERE - ATMOSPHERIC CARBON DIOXIDE
ATMOSPHERE - ATMOSPHERIC PRESSURE MEASUREMENTS
ATMOSPHERE - EVAPOTRANSPIRATION
ATMOSPHERE - HEAT FLUX
ATMOSPHERE - HUMIDITY
ATMOSPHERE - INCOMING SOLAR RADIATION
ATMOSPHERE - LONGWAVE RADIATION
ATMOSPHERE - PRECIPITATION AMOUNT
ATMOSPHERE - SHORTWAVE RADIATION
ATMOSPHERE - TRACE GASES/TRACE SPECIES
ATMOSPHERE - TURBULENCE
ATMOSPHERE - WIND DIRECTION
ATMOSPHERE - WIND SPEED
BIOSPHERE - PHOTOSYNTHETICALLY ACTIVE RADIATION
BIOSPHERE - TERRESTRIAL ECOSYSTEMS
LAND SURFACE - LAND PRODUCTIVITY
LAND SURFACE - SOIL MOISTURE/WATER CONTENT
LAND SURFACE - SOIL TEMPERATURE
SOLID EARTH - BIOGEOCHEMICAL PROCESSES
Horizontal Resolution
Point Resolution
Instruments
Gill WindMaster Pro
Gill Windsonic4
Hukseflux HFP01
Kipp&Zonen CNR4
LI-COR LI-7500
Stevens Hydraprobe
Vaisala HMP155
Parameters
air temperature
downward heat flux at ground level in soil
ecosystem respiration
enhanced vegetation index
gross primary productivity
magnitude of surface downward stress
mass concentration of water vapor in air
mole fraction of carbon dioxide in air
mole fraction of water vapor in air
Monin-Obukhov length
net ecosystem exchange
net ecosystem productivity
relative humidity
soil temperature
specific humidity
specific humidity saturation deficit in air
surface air pressure
surface downwelling longwave flux in air
surface downwelling shortwave flux in air
surface friction velocity
surface net downward radiative flux
surface upward flux of available energy
surface upward latent heat flux
surface upward mole flux of carbon dioxide
surface upward sensible heat flux
surface upwelling longwave flux in air
surface upwelling shortwave flux in air
thickness of rainfall amount
volume fraction of condensed water in soil
water evapotranspiration flux
water vapor partial pressure in air
water vapor saturation deficit in air
wind from direction
wind speed
Platforms
Samford Ecological Research Facility Flux Station
Temporal Resolution
1 minute - < 1 hour
Topic
climatologyMeteorologyAtmosphere
User Defined
AU-Sam
eddy covariance
pasture
Author
Grace, Peter
Rowlings, David
Grace, Liam
Co-Author
Tucker, David
Contact Point
Grace, Peter
Rowlings, David
Grace, Liam
Publisher
Terrestrial Ecosystem Research Network
Beringer J., Hutley L. B., McHugh I., Arndt S. K., Campbell D., Cleugh H. A., Cleverly J., Resco de Dios V., Eamus D., Evans B., Ewenz C., Grace P., Griebel A., Haverd V., Hinko-Najera N., Huete A., Isaac P., Kanniah K., Leuning R., Liddell M. J., Macfarlane C., Meyer W., Moore C., Pendall E., Phillips A., Phillips R. L., Prober S. M., Restrepo-Coupe N., Rutledge S., Schroder I., Silberstein R., Southall P., Yee M. S., Tapper N. J., van Gorsel E., Vote C., Walker J. and Wardlaw T. (2016). An introduction to the Australian and New Zealand flux tower network - OzFlux, Biogeosciences, 13: 5895-5916
Supplemental Information
Data not provided. 
Resource Specific Usage
Data not provided. 
Environment Description
File naming convention

The NetCDF files follow the naming convention below:

SiteName_ProcessingLevel_FromDate_ToDate_Type.nc
  • SiteName: short name of the site
  • ProcessingLevel: file processing level (L3, L4, L5, L6)
  • FromDate: temporal interval (start), YYYYMMDD
  • ToDate: temporal interval (end), YYYYMMDD
  • Type (Level 6 only): Summary, Monthly, Daily, Cumulative, Annual
For the NetCDF files at Level 6 (L6), there are several additional 'aggregated' files. For example:
  • Summary: This file is a summary of the L6 data for daily, monthly, annual and cumulative data. The files Monthly to Annual below are combined together in one file.
  • Monthly: This file shows L6 monthly averages of the respective variables, e.g. AH, Fc, NEE, etc.
  • Daily: same as Monthly but with daily averages.
  • Cumulative: File showing cumulative values for ecosystem respiration, evapo-transpiration, gross primary productivity, net ecosystem exchange and production as well as precipitation.
  • Annual: same as Monthly but with annual averages.
 
By Parent record
Samford Ecological Research Facility Flux Data Collection
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Terrestrial Ecosystem Research Network
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TERN services are provided on an “as-is” and “as available” basis. Users use any TERN services at their discretion and risk. They will be solely responsible for any damage or loss whatsoever that results from such use including use of any data obtained through TERN and any analysis performed using the TERN infrastructure.

Web links to and from external, third party websites should not be construed as implying any relationships with and/or endorsement of the external site or its content by TERN.

Please advise any work or publications that use this data via the online form at https://www.tern.org.au/research-publications/#reporting 
Please cite this dataset as {Author} ({PublicationYear}). {Title}. {Version, as appropriate}. Terrestrial Ecosystem Research Network. Dataset. {Identifier}. 

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