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Cape Tribulation Flux Data Release 2024_v1 

Ver: 2024_v1
Status of Data: completed
Update Frequency: biannually
Security Classification: unclassified
Record Last Modified: 2025-12-02
Viewed 41 times
Accessed 9 times
Dataset Created: 2024-03-15
Dataset Published: 2024-04-18
Data can be accessed from the following links:
HTTPPoint-of-truth metadata URLOPeNDAPNetCDF files (2024_v1)HTTPro-crate-metadata.json
How to cite this collection:
Liddell, M. & Weigand, N. (2024). Cape Tribulation Flux Data Release 2024_v1. Version 2024_v1. Terrestrial Ecosystem Research Network. Dataset. https://dx.doi.org/10.25901/cpgv-dx70 
This release consists of flux tower measurements of the exchange of energy and mass between the surface and the atmospheric boundary-layer using eddy covariance techniques. Data were processed using PyFluxPro (v3.4.15) as described by Isaac et al. (2017). PyFluxPro produces a final, gap-filled product with Net Ecosystem Exchange (NEE) partitioned into Gross Primary Productivity (GPP) and Ecosystem Respiration (ER).

The Cape Tribulation flux station was located in the land that is adjacent to the Daintree National Park which is part of the Wet Tropics World Heritage Area (WTWHA). The site is flanked to the west by coastal ranges rising to more than 1400 m and to the east by the Coral Sea. The red clay loam podzolic soils are of metamorphic origin and have good drainage characteristics. The metamorphic rocks grade into granite boulders along Thompson Creek which runs along the northern boundary of the site. The crane site itself is gently sloping but the fetch area makes the site one of very complex terrain. The forest is classed as complex mesophyll vine forest (type 1a) and has an average canopy height of 25m. The dominant canopy trees belong to the Apocynaceae, Arecaceae, Euphorbiaceae, Lauraceae, Meliaceae, Myristicaceae and Myrtaceae families. The forest is continuous for several kilometres around the crane except for an area 300 m due east of the crane, which is regrowth forest. Annual average rainfall at the site is around 5180 mm and is strongly seasonal, with 66% falling between January and April (wet season). Mean daily temperature ranges from 26.6 °C in February to 21.2 °C in July.

Tropical cyclones are a frequent occurrence in Far North Queensland. These severe tropical storm systems are natural phenomena which play a major role in determining the ecology of Queensland's tropical lowland rainforests. In March 1999 Tropical Cyclone Rona (Category 3) passed over the Cape Tribulation area causing widespread damage (gusts >170 km/h). At the site several large trees fell, nearly all of the remaining trees were stripped of leaves and the lianas towers were torn to ground level.

The flux station was mounted at the 45 m level on the tower of the Australian Canopy Crane external link. The canopy crane is a Liebherr 91 EC, freestanding construction tower crane. The crane is 48.5 m tall with a radius of 55 m enabling access to 1 hectare of rainforest. Fluxes of heat, water vapour and carbon dioxide were measured using the open-path eddy covariance technique. Supplementary measurements above the canopy included temperature, humidity, rainfall, total solar; these measurements have continued post the flux system decommissioning. Heat flux, soil temperature and water content (time domain reflectometry) were measured in proximity to the flux station; these measurements have continued post the flux system decommissioning. Detailed biometric measurements are made at the crane site and all trees have regular (5 yearly) dbh measurements and canopy mapping carried out. Monitoring bores (3) are located on site. Leaf litter measurements are carried out on a monthly basis. 
Credit
We at TERN acknowledge the Traditional Owners and Custodians throughout Australia, New Zealand and all nations. We honour their profound connections to land, water, biodiversity and culture and pay our respects to their Elders past, present and emerging.
The Cape Tribulation flux station is managed by the James Cook University as part of the TERN (DIISR funded) FNQ Rainforest Supersite. Equipment was provided by grants from the ARC external link (RIEFP) and JCU.
Past support was from the Rainforest CRC and Department of Environment and Heritage - Marine and Tropical Sciences Research Facility Project 5ii.2. Climate Change: Scaling from trees to ecosystems. 
Purpose
The purpose of the Cape Tribulation flux station is to:
  • measure exchanges of carbon dioxide, water vapour and energy between the tropical rainforest and the atmosphere using micrometeorological techniques
  • quantify the changes in carbon and energy balances of an Australian tropical rainforest during the course of post-cyclone canopy recovery. Closely linked to the micrometeorological ecosystem-level studies are leaf-level studies of the major tree and liana species at the site (Dr Owen Atkin, ANU; Dr Peter Hietz, Vienna) and water balance and soil carbon studies (Drs P. Nelson, Marc Le Blanc, JCU)
  • recommend management strategies for the conservation of carbon stores in tropical rainforest ecosystems that are subject to relatively frequent cyclone disturbance.
 
Lineage
All flux raw data is subject to the quality control process OzFlux QA/QC to generate data from L1 to L6. Levels 3 to 6 are available for re-use. Datasets contain Quality Controls flags which will indicate when data quality is poor and has been filled from alternative sources. For more details, refer to Isaac et al. (2017). 
Method DocumentationIsaac P., Cleverly J., McHugh I., van Gorsel E., Ewenz C. and Beringer, J. (2017). OzFlux data: network integration from collection to curation, Biogeosciences, 14: 2903-2928PyFluxPro
Procedure StepsData not provided.
Daintree Rainforest Observatory, Cape Tribulation, Queensland.
Temporal Coverage
From 2010-01-01 to 2018-11-02 
Spatial Resolution

Data not provided.

Vertical Extent

Data not provided.

Data Quality Assessment Scope
Processing levels

Under each of the data release directories, the netcdf files are organised by processing levels (L3, L4, L5 and L6):
  • L3 (Level 3) processing applies a range of quality assurance/quality control measures (QA/QC) to the L1 data. The variable names are mapped to the standard variable names (CF 1.8) as part of this step. The L3 netCDF file is then the starting point for all further processing stages.
  • L4 (Level 4) processing fills gaps in the radiation, meteorological and soil quantities utilising AWS (automated weather station), ACCESS-G (Australian Community Climate and Earth-System Simulator) and ERA5 (the fifth generation ECMWF atmospheric reanalysis of the global climate).
  • L5 (Level 5) processing fills gaps in the flux data employing the artificial neural network SOLO (self-organising linear output map).
  • L6 (Level 6) processing partitions the gap-filled NEE into GPP and ER.
Each processing level has two sub-folders ‘default’ and ‘site_pi’:
  • default: contains files processed using PyFluxPro
  • site_pi: contains files processed by the principal investigators of the site.
If the data quality is poor, the data is filled from alternative sources. Filled data can be identified by the Quality Controls flags in the dataset. Quality control checks include:
  • range checks for plausible limits
  • spike detection
  • dependency on other variables
  • manual rejection of date ranges
Specific checks applied to the sonic and IRGA data include rejection of points based on the sonic and IRGA diagnostic values and on either automatic gain control (AGC) or CO2 and H2O signal strength, depending upon the configuration of the IRGA.

Cape Tribulation Flux Tower was established in January 2010, and stopped measuring in November 2018. The processed data release is currently ongoing, biannually. 
Isaac P., Cleverly J., McHugh I., van Gorsel E., Ewenz C. and Beringer, J. (2017). OzFlux data: network integration from collection to curation, Biogeosciences, 14: 2903-2928
Data Quality Assessment Outcome
Data not provided. 
ANZSRC - FOR
Atmospheric sciences
Climate change impacts and adaptation
Ecosystem function
Environmental management
Soil sciences
GCMD Sciences
ATMOSPHERE - AIR TEMPERATURE
ATMOSPHERE - ATMOSPHERIC CARBON DIOXIDE
ATMOSPHERE - ATMOSPHERIC PRESSURE MEASUREMENTS
ATMOSPHERE - EVAPOTRANSPIRATION
ATMOSPHERE - HEAT FLUX
ATMOSPHERE - HUMIDITY
ATMOSPHERE - INCOMING SOLAR RADIATION
ATMOSPHERE - LONGWAVE RADIATION
ATMOSPHERE - PRECIPITATION AMOUNT
ATMOSPHERE - SHORTWAVE RADIATION
ATMOSPHERE - TRACE GASES/TRACE SPECIES
ATMOSPHERE - TURBULENCE
ATMOSPHERE - WIND DIRECTION
ATMOSPHERE - WIND SPEED
BIOSPHERE - PHOTOSYNTHETICALLY ACTIVE RADIATION
BIOSPHERE - TERRESTRIAL ECOSYSTEMS
LAND SURFACE - LAND PRODUCTIVITY
LAND SURFACE - SOIL MOISTURE/WATER CONTENT
LAND SURFACE - SOIL TEMPERATURE
SOLID EARTH - BIOGEOCHEMICAL PROCESSES
Horizontal Resolution
Point Resolution
Instruments
Campbell Scientific CS616
Campbell Scientific CSAT3
Campbell Scientific TCAV Averaging Soil Thermocouple Probe
Environdata WeatherMaster 2000
Hukseflux HFP01
Hukseflux NR01
LI-COR LI-190 (SA, SZ, and SL versions)
LI-COR LI-7500
Observator RIM-8000 series rain gauge
Vaisala HMP45C
Vaisala WXT520
Parameters
air temperature
downward heat flux at ground level in soil
ecosystem respiration
enhanced vegetation index
gross primary productivity
lateral component of wind speed
longitudinal component of wind speed
magnitude of surface downward stress
mass concentration of water vapor in air
mole fraction of carbon dioxide in air
mole fraction of water vapor in air
Monin-Obukhov length
net ecosystem exchange
net ecosystem productivity
relative humidity
soil temperature
specific humidity
specific humidity saturation deficit in air
surface air pressure
surface downwelling longwave flux in air
surface downwelling photosynthetic photon flux in air
surface downwelling shortwave flux in air
surface friction velocity
surface net downward radiative flux
surface upward flux of available energy
surface upward latent heat flux
surface upward mole flux of carbon dioxide
surface upward sensible heat flux
surface upwelling longwave flux in air
surface upwelling shortwave flux in air
thickness of rainfall amount
vertical wind
volume fraction of condensed water in soil
water evapotranspiration flux
water vapor partial pressure in air
water vapor saturation deficit in air
wind from direction
wind speed
Platforms
Cape Tribulation Flux Station
Temporal Resolution
1 minute - < 1 hour
Topic
climatologyMeteorologyAtmosphere
User Defined
AU-Ctr
mesophyll vine forest
Author
Liddell, Michael
Co-Author
Weigand, Nico
Contact Point
Liddell, Michael
Publisher
Terrestrial Ecosystem Research Network
Beringer J., Hutley L. B., McHugh I., Arndt S. K., Campbell D., Cleugh H. A., Cleverly J., Resco de Dios V., Eamus D., Evans B., Ewenz C., Grace P., Griebel A., Haverd V., Hinko-Najera N., Huete A., Isaac P., Kanniah K., Leuning R., Liddell M. J., Macfarlane C., Meyer W., Moore C., Pendall E., Phillips A., Phillips R. L., Prober S. M., Restrepo-Coupe N., Rutledge S., Schroder I., Silberstein R., Southall P., Yee M. S., Tapper N. J., van Gorsel E., Vote C., Walker J. and Wardlaw T. (2016). An introduction to the Australian and New Zealand flux tower network - OzFlux, Biogeosciences, 13: 5895-5916
Supplemental Information
Data not provided. 
Resource Specific Usage
Data not provided. 
Environment Description
File naming convention

The NetCDF files follow the naming convention below:

SiteName_ProcessingLevel_FromDate_ToDate_Type.nc
  • SiteName: short name of the site
  • ProcessingLevel: file processing level (L3, L4, L5, L6)
  • FromDate: temporal interval (start), YYYYMMDD
  • ToDate: temporal interval (end), YYYYMMDD
  • Type (Level 6 only): Summary, Monthly, Daily, Cumulative, Annual
For the NetCDF files at Level 6 (L6), there are several additional 'aggregated' files. For example:
  • Summary: This file is a summary of the L6 data for daily, monthly, annual and cumulative data. The files Monthly to Annual below are combined together in one file.
  • Monthly: This file shows L6 monthly averages of the respective variables, e.g. AH, Fc, NEE, etc.
  • Daily: same as Monthly but with daily averages.
  • Cumulative: File showing cumulative values for ecosystem respiration, evapo-transpiration, gross primary productivity, net ecosystem exchange and production as well as precipitation.
  • Annual: same as Monthly but with annual averages.
 
By Parent record
Cape Tribulation Flux Data Collection
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Please cite this dataset as {Author} ({PublicationYear}). {Title}. {Version, as appropriate}. Terrestrial Ecosystem Research Network. Dataset. {Identifier}. 
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Please advise any work or publications that use this data via the online form at https://www.tern.org.au/research-publications/#reporting 

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